Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | pmenTA/darT(toxin) |
Location | 5599589..5601324 | Replicon | chromosome |
Accession | NZ_CP123771 | ||
Organism | Pseudomonas viciae strain YsS1 |
Toxin (Protein)
Gene name | pmenT | Uniprot ID | - |
Locus tag | QCD61_RS24465 | Protein ID | WP_280944417.1 |
Coordinates | 5599589..5600233 (+) | Length | 215 a.a. |
Antitoxin (Protein)
Gene name | pmenA | Uniprot ID | - |
Locus tag | QCD61_RS24470 | Protein ID | WP_280944418.1 |
Coordinates | 5600230..5601324 (+) | Length | 365 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QCD61_RS24450 (QCD61_24450) | 5595091..5597460 | - | 2370 | WP_280944414.1 | DEAD/DEAH box helicase family protein | - |
QCD61_RS24455 (QCD61_24455) | 5597663..5598778 | - | 1116 | WP_280944415.1 | endonuclease NucS | - |
QCD61_RS24460 (QCD61_24460) | 5599011..5599592 | + | 582 | WP_280944416.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
QCD61_RS24465 (QCD61_24465) | 5599589..5600233 | + | 645 | WP_280944417.1 | DUF4433 domain-containing protein | Toxin |
QCD61_RS24470 (QCD61_24470) | 5600230..5601324 | + | 1095 | WP_280944418.1 | macro domain-containing protein | Antitoxin |
QCD61_RS24475 (QCD61_24475) | 5601515..5601874 | - | 360 | WP_280944419.1 | DUF6124 family protein | - |
QCD61_RS24480 (QCD61_24480) | 5602287..5602862 | - | 576 | WP_280944420.1 | hypothetical protein | - |
QCD61_RS24485 (QCD61_24485) | 5603053..5603412 | - | 360 | WP_280944421.1 | DUF6124 family protein | - |
QCD61_RS24490 (QCD61_24490) | 5604005..5605279 | - | 1275 | WP_212801514.1 | glycoside hydrolase family 68 protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 5588328..5602862 | 14534 | |
- | inside | Genomic island | - | - | 5587665..5603412 | 15747 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 215 a.a. Molecular weight: 24877.60 Da Isoelectric Point: 8.4140
>T279149 WP_280944417.1 NZ_CP123771:5599589-5600233 [Pseudomonas viciae]
MIYSRLNPEKALIWRIVHRDNLPWILDNGLHCANSNVQSPQYVNIGNPDLIDKRRTRHVPIAPGGVLADYVPFYFTPFSV
MMKNIHSGRSVQQRSNDEIVILVSSLYRIELMGLPFVYTTAHAYPDWTDYYSDLANLGQIDWSIIQRRDFKREPDDPRKM
ERYQAEALIHNHLPITGLLGIMCYTDAMKKRIEQDVAARGLVLPVYARPGWYFQ
MIYSRLNPEKALIWRIVHRDNLPWILDNGLHCANSNVQSPQYVNIGNPDLIDKRRTRHVPIAPGGVLADYVPFYFTPFSV
MMKNIHSGRSVQQRSNDEIVILVSSLYRIELMGLPFVYTTAHAYPDWTDYYSDLANLGQIDWSIIQRRDFKREPDDPRKM
ERYQAEALIHNHLPITGLLGIMCYTDAMKKRIEQDVAARGLVLPVYARPGWYFQ
Download Length: 645 bp
Antitoxin
Download Length: 365 a.a. Molecular weight: 40863.76 Da Isoelectric Point: 5.9506
>AT279149 WP_280944418.1 NZ_CP123771:5600230-5601324 [Pseudomonas viciae]
MIRFTQGNLLEAKTEALVNTVNTVGVMGKGIALMFKERFTENYRLYSAACKAGEVETGKVHVTAANELDGPRWIVNFPTK
RHWRSPSQMAWITEGLHDLRRFLIENDVKSVAVPPLGAGNGGLKWPEVREQIVEILSDLDVDVLVFEPSNQYLNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIEKLPNTENPLNLQFVAHKYGPYANRLEHLLNNLDGSYLH
CDKRISDAGISDVIWFDEGRKAFLQTYLQTEAKEYTQALERTAELIDGFESPFGMELLATVDWLLSQDGISPTVPAVREA
LKHWDGGAGAAARKSKLFDDQALDIALKRLTSSSFRPEMASCQG
MIRFTQGNLLEAKTEALVNTVNTVGVMGKGIALMFKERFTENYRLYSAACKAGEVETGKVHVTAANELDGPRWIVNFPTK
RHWRSPSQMAWITEGLHDLRRFLIENDVKSVAVPPLGAGNGGLKWPEVREQIVEILSDLDVDVLVFEPSNQYLNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIEKLPNTENPLNLQFVAHKYGPYANRLEHLLNNLDGSYLH
CDKRISDAGISDVIWFDEGRKAFLQTYLQTEAKEYTQALERTAELIDGFESPFGMELLATVDWLLSQDGISPTVPAVREA
LKHWDGGAGAAARKSKLFDDQALDIALKRLTSSSFRPEMASCQG
Download Length: 1095 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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