279148

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2307976..2308498 Replicon chromosome
Accession NZ_CP123771
Organism Pseudomonas viciae strain YsS1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QCD61_RS10380 Protein ID WP_135844720.1
Coordinates 2308214..2308498 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QCD61_RS10375 Protein ID WP_135844719.1
Coordinates 2307976..2308224 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QCD61_RS10360 (QCD61_10360) 2304400..2305401 + 1002 WP_280944826.1 AAA family ATPase -
QCD61_RS10365 (QCD61_10365) 2305503..2306057 + 555 WP_280944959.1 VWA domain-containing protein -
QCD61_RS10370 (QCD61_10370) 2306263..2307909 + 1647 WP_135844718.1 phospholipase D-like domain-containing protein -
QCD61_RS10375 (QCD61_10375) 2307976..2308224 + 249 WP_135844719.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QCD61_RS10380 (QCD61_10380) 2308214..2308498 + 285 WP_135844720.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QCD61_RS10385 (QCD61_10385) 2308607..2308948 + 342 WP_280944827.1 hypothetical protein -
QCD61_RS10390 (QCD61_10390) 2309373..2310221 + 849 WP_135844722.1 transporter substrate-binding domain-containing protein -
QCD61_RS10395 (QCD61_10395) 2310276..2310938 + 663 WP_135844723.1 amino acid ABC transporter permease -
QCD61_RS10400 (QCD61_10400) 2310948..2311610 + 663 WP_135844724.1 amino acid ABC transporter permease -
QCD61_RS10405 (QCD61_10405) 2311607..2312413 + 807 WP_256452553.1 amino acid ABC transporter ATP-binding protein -
QCD61_RS10410 (QCD61_10410) 2312451..2312840 + 390 WP_135844726.1 RidA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10946.63 Da        Isoelectric Point: 10.2243

>T279148 WP_135844720.1 NZ_CP123771:2308214-2308498 [Pseudomonas viciae]
MTYELEFSDKAWKEWQKLGATLRAQFKKKLEERLENPHVQADRLHGLGNAYKIKLRNAGYRLVYRVVDDLLVVTVIGVGK
RERGQVYDEAAAKR

Download         Length: 285 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8999.39 Da        Isoelectric Point: 4.4000

>AT279148 WP_135844719.1 NZ_CP123771:2307976-2308224 [Pseudomonas viciae]
MTHIVLSQVVASISELKKNPMGTVAAGGGLSVAILNRNEPAFYCVPAKEYEAMMDRLEDMELVALCRERENDSTIKVSLD
DL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References