Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2307976..2308498 Replicon chromosome
Accession NZ_CP123771
Organism Pseudomonas viciae strain YsS1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QCD61_RS10380 Protein ID WP_135844720.1
Coordinates 2308214..2308498 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QCD61_RS10375 Protein ID WP_135844719.1
Coordinates 2307976..2308224 (+) Length 83 a.a.

Genomic Context

QCD61_RS10360QCD61_RS10365QCD61_RS10370QCD61_RS10375QCD61_RS10380QCD61_RS10385QCD61_RS10390QCD61_RS10395QCD61_RS10400QCD61_RS10405QCD61_RS10410
Location: 2304400..2305401 (1002 bp)
Type: Others
Protein ID: WP_280944826.1
Location: 2305503..2306057 (555 bp)
Type: Others
Protein ID: WP_280944959.1
Location: 2306263..2307909 (1647 bp)
Type: Others
Protein ID: WP_135844718.1
Location: 2307976..2308224 (249 bp)
Type: Antitoxin
Protein ID: WP_135844719.1
Location: 2308214..2308498 (285 bp)
Type: Toxin
Protein ID: WP_135844720.1
Location: 2308607..2308948 (342 bp)
Type: Others
Protein ID: WP_280944827.1
Location: 2309373..2310221 (849 bp)
Type: Others
Protein ID: WP_135844722.1
Location: 2310276..2310938 (663 bp)
Type: Others
Protein ID: WP_135844723.1
Location: 2310948..2311610 (663 bp)
Type: Others
Protein ID: WP_135844724.1
Location: 2311607..2312413 (807 bp)
Type: Others
Protein ID: WP_256452553.1
Location: 2312451..2312840 (390 bp)
Type: Others
Protein ID: WP_135844726.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QCD61_RS10360 (QCD61_10360)2304400..2305401+1002WP_280944826.1AAA family ATPase-
QCD61_RS10365 (QCD61_10365)2305503..2306057+555WP_280944959.1VWA domain-containing protein-
QCD61_RS10370 (QCD61_10370)2306263..2307909+1647WP_135844718.1phospholipase D-like domain-containing protein-
QCD61_RS10375 (QCD61_10375)2307976..2308224+249WP_135844719.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
QCD61_RS10380 (QCD61_10380)2308214..2308498+285WP_135844720.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QCD61_RS10385 (QCD61_10385)2308607..2308948+342WP_280944827.1hypothetical protein-
QCD61_RS10390 (QCD61_10390)2309373..2310221+849WP_135844722.1transporter substrate-binding domain-containing protein-
QCD61_RS10395 (QCD61_10395)2310276..2310938+663WP_135844723.1amino acid ABC transporter permease-
QCD61_RS10400 (QCD61_10400)2310948..2311610+663WP_135844724.1amino acid ABC transporter permease-
QCD61_RS10405 (QCD61_10405)2311607..2312413+807WP_256452553.1amino acid ABC transporter ATP-binding protein-
QCD61_RS10410 (QCD61_10410)2312451..2312840+390WP_135844726.1RidA family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10946.63 Da        Isoelectric Point: 10.2243

>T279148 WP_135844720.1 NZ_CP123771:2308214-2308498 [Pseudomonas viciae]
MTYELEFSDKAWKEWQKLGATLRAQFKKKLEERLENPHVQADRLHGLGNAYKIKLRNAGYRLVYRVVDDLLVVTVIGVGK
RERGQVYDEAAAKR

Download         Length: 285 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8999.39 Da        Isoelectric Point: 4.4000

>AT279148 WP_135844719.1 NZ_CP123771:2307976-2308224 [Pseudomonas viciae]
MTHIVLSQVVASISELKKNPMGTVAAGGGLSVAILNRNEPAFYCVPAKEYEAMMDRLEDMELVALCRERENDSTIKVSLD
DL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References