Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 638024..638169 | Replicon | chromosome |
| Accession | NZ_CP123642 | ||
| Organism | Klebsiella pneumoniae strain KpBSB53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 638060..638162 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 638024..638169 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFW99_RS03625 | 633154..635214 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QFW99_RS03630 | 635218..635877 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QFW99_RS03635 | 635956..636186 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QFW99_RS03640 | 636299..636673 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QFW99_RS03645 | 636677..637546 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| QFW99_RS03650 | 637563..637901 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 638024..638169 | - | 146 | - | - | Antitoxin |
| - | 638060..638162 | + | 103 | - | - | Toxin |
| QFW99_RS03655 | 638537..638680 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QFW99_RS03660 | 638785..639753 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QFW99_RS03665 | 639910..640563 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| QFW99_RS03670 | 640560..640751 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QFW99_RS03675 | 640849..641088 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QFW99_RS03680 | 641204..642637 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T279096 NZ_CP123642:638060-638162 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT279096 NZ_CP123642:c638169-638024 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
