Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2883899..2884039 | Replicon | chromosome |
| Accession | NZ_CP123607 | ||
| Organism | Serratia marcescens strain RMCH-M16-N | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2883899..2883995 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2883899..2884039 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFB85_RS13645 (QFB85_13645) | 2879399..2880598 | - | 1200 | WP_004940952.1 | trans-2-enoyl-CoA reductase family protein | - |
| QFB85_RS13650 (QFB85_13650) | 2880875..2881651 | + | 777 | WP_053089782.1 | DUF4225 domain-containing protein | - |
| QFB85_RS13655 (QFB85_13655) | 2881651..2881953 | + | 303 | WP_042784229.1 | hypothetical protein | - |
| QFB85_RS13660 (QFB85_13660) | 2882004..2882354 | - | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| QFB85_RS13665 (QFB85_13665) | 2882603..2882953 | + | 351 | WP_280630665.1 | hypothetical protein | - |
| QFB85_RS13670 (QFB85_13670) | 2883028..2883246 | + | 219 | WP_004940942.1 | hypothetical protein | - |
| QFB85_RS13675 (QFB85_13675) | 2883243..2883647 | - | 405 | WP_280630666.1 | hypothetical protein | - |
| - | 2883899..2883995 | - | 97 | - | - | Toxin |
| - | 2883899..2884039 | + | 141 | - | - | Antitoxin |
| QFB85_RS13680 (QFB85_13680) | 2884137..2884478 | - | 342 | WP_004940890.1 | YebY family protein | - |
| QFB85_RS13685 (QFB85_13685) | 2884548..2885429 | - | 882 | WP_031300111.1 | copper homeostasis membrane protein CopD | - |
| QFB85_RS13690 (QFB85_13690) | 2885432..2885815 | - | 384 | WP_240437446.1 | CopC domain-containing protein YobA | - |
| QFB85_RS13695 (QFB85_13695) | 2886140..2886658 | - | 519 | WP_015377481.1 | non-heme ferritin | - |
| QFB85_RS13700 (QFB85_13700) | 2887003..2887233 | + | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| QFB85_RS13705 (QFB85_13705) | 2887265..2888218 | - | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| QFB85_RS13710 (QFB85_13710) | 2888375..2888770 | - | 396 | WP_015377479.1 | RidA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T279085 NZ_CP123607:c2883995-2883899 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT279085 NZ_CP123607:2883899-2884039 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
