Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4152843..4152994 | Replicon | chromosome |
| Accession | NZ_CP123598 | ||
| Organism | Enterobacter cloacae strain RMCH-M23-N | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4152856..4152959 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4152843..4152994 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFB83_RS19750 (QFB83_19750) | 4149119..4150561 | + | 1443 | WP_047352451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QFB83_RS19755 (QFB83_19755) | 4150667..4150906 | + | 240 | WP_047352450.1 | YebV family protein | - |
| QFB83_RS19760 (QFB83_19760) | 4150940..4151584 | - | 645 | WP_047352449.1 | protein-serine/threonine phosphatase | - |
| QFB83_RS19765 (QFB83_19765) | 4151751..4152692 | + | 942 | WP_047352448.1 | VirK/YbjX family protein | - |
| - | 4152843..4152994 | + | 152 | - | - | Antitoxin |
| - | 4152856..4152959 | - | 104 | - | - | Toxin |
| QFB83_RS19770 (QFB83_19770) | 4153099..4153437 | - | 339 | WP_013096105.1 | YebY family protein | - |
| QFB83_RS19775 (QFB83_19775) | 4153454..4154323 | - | 870 | WP_280595855.1 | copper homeostasis membrane protein CopD | - |
| QFB83_RS19780 (QFB83_19780) | 4154325..4154696 | - | 372 | WP_020690820.1 | CopC domain-containing protein YobA | - |
| QFB83_RS19785 (QFB83_19785) | 4154834..4155064 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| QFB83_RS19790 (QFB83_19790) | 4155174..4155824 | + | 651 | WP_045294396.1 | carbon-nitrogen hydrolase family protein | - |
| QFB83_RS19795 (QFB83_19795) | 4155848..4156510 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T279072 NZ_CP123598:c4152959-4152856 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT279072 NZ_CP123598:4152843-4152994 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
