Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1207184..1207324 | Replicon | chromosome |
| Accession | NZ_CP123597 | ||
| Organism | Serratia marcescens strain RMCH-M26-N | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1207228..1207324 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1207184..1207324 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFB82_RS06005 (QFB82_06005) | 1202452..1202847 | + | 396 | WP_004928846.1 | RidA family protein | - |
| QFB82_RS06010 (QFB82_06010) | 1203004..1203957 | + | 954 | WP_280598142.1 | prolyl aminopeptidase | - |
| QFB82_RS06015 (QFB82_06015) | 1203989..1204219 | - | 231 | WP_044031457.1 | DNA polymerase III subunit theta | - |
| QFB82_RS06020 (QFB82_06020) | 1204564..1205082 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| QFB82_RS06025 (QFB82_06025) | 1205375..1205791 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| QFB82_RS06030 (QFB82_06030) | 1205794..1206675 | + | 882 | WP_280598144.1 | copper homeostasis membrane protein CopD | - |
| QFB82_RS06035 (QFB82_06035) | 1206745..1207086 | + | 342 | WP_085336338.1 | YebY family protein | - |
| - | 1207184..1207324 | - | 141 | - | - | Antitoxin |
| - | 1207228..1207324 | + | 97 | - | - | Toxin |
| QFB82_RS06040 (QFB82_06040) | 1207576..1207980 | + | 405 | WP_280598145.1 | hypothetical protein | - |
| QFB82_RS06045 (QFB82_06045) | 1207977..1208195 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| QFB82_RS06050 (QFB82_06050) | 1208270..1208620 | - | 351 | WP_004940946.1 | hypothetical protein | - |
| QFB82_RS06055 (QFB82_06055) | 1208869..1209219 | + | 351 | WP_033633331.1 | DUF4377 domain-containing protein | - |
| QFB82_RS06060 (QFB82_06060) | 1209270..1209572 | - | 303 | WP_164095000.1 | hypothetical protein | - |
| QFB82_RS06065 (QFB82_06065) | 1209859..1211058 | + | 1200 | WP_016928134.1 | trans-2-enoyl-CoA reductase family protein | - |
| QFB82_RS06070 (QFB82_06070) | 1211285..1211503 | + | 219 | WP_015377541.1 | hypothetical protein | - |
| QFB82_RS06075 (QFB82_06075) | 1211675..1211980 | + | 306 | WP_004940954.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T279051 NZ_CP123597:1207228-1207324 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT279051 NZ_CP123597:c1207324-1207184 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
