Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-pasA/RelE-HTH
Location 2086996..2087329 Replicon chromosome
Accession NC_018002
Organism Sulfurospirillum barnesii SES-3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SULBA_RS12885 Protein ID WP_156790578.1
Coordinates 2086996..2087178 (-) Length 61 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag SULBA_RS12975 Protein ID WP_156790539.1
Coordinates 2087162..2087329 (-) Length 56 a.a.

Genomic Context

SULBA_RS10460SULBA_RS12810SULBA_RS10475SULBA_RS10480SULBA_RS10485SULBA_RS10490SULBA_RS10495SULBA_RS10500SULBA_RS10505SULBA_RS10465SULBA_RS12885SULBA_RS12975
Location: 2082536..2083546 (1011 bp)
Type: Others
Protein ID: WP_014770259.1
Location: 2085434..2086258 (825 bp)
Type: Others
Protein ID: WP_083834418.1
Location: 2086452..2086826 (375 bp)
Type: Others
Protein ID: WP_014770261.1
Location: 2087510..2087986 (477 bp)
Type: Others
Protein ID: WP_014770262.1
Location: 2088124..2088942 (819 bp)
Type: Others
Protein ID: WP_014770263.1
Location: 2088950..2089615 (666 bp)
Type: Others
Protein ID: WP_156790579.1
Location: 2089612..2090322 (711 bp)
Type: Others
Protein ID: WP_014770265.1
Location: 2090312..2090761 (450 bp)
Type: Others
Protein ID: WP_041671850.1
Location: 2090754..2091773 (1020 bp)
Type: Others
Protein ID: WP_014770266.1
Location: 2083687..2084889 (1203 bp)
Type: Others
Protein ID: WP_014768976.1
Location: 2086996..2087178 (183 bp)
Type: Toxin
Protein ID: WP_156790578.1
Location: 2087162..2087329 (168 bp)
Type: Antitoxin
Protein ID: WP_156790539.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
SULBA_RS104602082536..2083546+1011WP_014770259.1hypothetical protein-
SULBA_RS104652083687..2084889-1203WP_014768976.1IS256 family transposase-
SULBA_RS128102085434..2086258+825WP_083834418.1signal peptidase I-
SULBA_RS104752086452..2086826+375WP_014770261.1hypothetical protein-
SULBA_RS128852086996..2087178-183WP_156790578.1type II toxin-antitoxin system RelE/ParE family toxinToxin
SULBA_RS129752087162..2087329-168WP_156790539.1hypothetical proteinAntitoxin
SULBA_RS104802087510..2087986+477WP_014770262.1glutathione peroxidase-
SULBA_RS104852088124..2088942+819WP_014770263.1sirohydrochlorin cobaltochelatase-
SULBA_RS104902088950..2089615+666WP_156790579.1cobalt-precorrin-2 C(20)-methyltransferase-
SULBA_RS104952089612..2090322+711WP_014770265.1precorrin-8X methylmutase-
SULBA_RS105002090312..2090761+450WP_041671850.1(2Fe-2S) ferredoxin domain-containing protein-
SULBA_RS105052090754..2091773+1020WP_014770266.1cobalt-precorrin-5B (C(1))-methyltransferase CbiD-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-57)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 7245.42 Da        Isoelectric Point: 10.2553

>T27900 WP_156790578.1 NC_018002:c2087178-2086996 [Sulfurospirillum barnesii SES-3]
IKHLSDCTDPRDKGKKRKGKLKEFWRYRVGDYRIITKITDQEITILVLKVAHRKDVYEDQ

Download         Length: 183 bp

>T27900 NC_018002:c2087178-2086996 [Sulfurospirillum barnesii SES-3]
ATCAAACACCTGAGTGACTGTACTGACCCAAGAGACAAAGGCAAGAAACGCAAAGGCAAACTCAAAGAATTTTGGCGATA
TAGAGTAGGCGATTATCGCATCATTACCAAAATCACCGATCAAGAAATCACGATTTTAGTTTTGAAGGTGGCGCATCGAA
AAGATGTGTATGAGGATCAGTAA

Antitoxin


Download         Length: 56 a.a.        Molecular weight: 6598.36 Da        Isoelectric Point: 4.3308

>AT27900 WP_156790539.1 NC_018002:c2087329-2087162 [Sulfurospirillum barnesii SES-3]
MATSIRLDDSFEARLTRLATLTDRPKSFYIRKLFEDYFENLEDYYLAEKADQTPE

Download         Length: 168 bp

>AT27900 NC_018002:c2087329-2087162 [Sulfurospirillum barnesii SES-3]
ATGGCTACTTCTATTAGACTCGATGATAGTTTTGAAGCACGATTGACTCGGTTAGCAACCTTAACAGATCGTCCAAAATC
TTTTTATATTAGAAAGTTGTTTGAAGATTATTTTGAGAATTTGGAAGATTATTATTTAGCAGAAAAAGCAGATCAAACAC
CTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References