Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1944987..1945125 | Replicon | chromosome |
| Accession | NZ_CP123488 | ||
| Organism | Kluyvera intermedia strain DW18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1945023..1945125 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1944987..1945125 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBD33_RS09385 | 1941460..1942119 | - | 660 | WP_062776160.1 | exodeoxyribonuclease X | - |
| QBD33_RS09390 | 1942143..1942811 | - | 669 | WP_153742666.1 | carbon-nitrogen hydrolase family protein | - |
| QBD33_RS09395 | 1942900..1943130 | - | 231 | WP_062776164.1 | DNA polymerase III subunit theta | - |
| QBD33_RS09400 | 1943268..1943642 | + | 375 | WP_062776289.1 | CopC domain-containing protein YobA | - |
| QBD33_RS09405 | 1943645..1944514 | + | 870 | WP_153742668.1 | copper homeostasis membrane protein CopD | - |
| QBD33_RS09410 | 1944529..1944867 | + | 339 | WP_126441004.1 | YebY family protein | - |
| - | 1944987..1945125 | - | 139 | - | - | Antitoxin |
| - | 1945023..1945125 | + | 103 | - | - | Toxin |
| QBD33_RS09415 | 1945601..1946536 | + | 936 | WP_062776168.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| QBD33_RS09420 | 1946571..1946810 | - | 240 | WP_062776169.1 | YebV family protein | - |
| QBD33_RS09425 | 1946922..1948361 | - | 1440 | WP_153742669.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T278990 NZ_CP123488:1945023-1945125 [Kluyvera intermedia]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT278990 NZ_CP123488:c1945125-1944987 [Kluyvera intermedia]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
