Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837896..1838041 | Replicon | chromosome |
| Accession | NZ_CP123430 | ||
| Organism | Klebsiella pneumoniae strain SH22PE16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837932..1838034 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837896..1838041 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEZ34_RS08915 | 1833026..1835086 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QEZ34_RS08920 | 1835090..1835749 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QEZ34_RS08925 | 1835828..1836058 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QEZ34_RS08930 | 1836171..1836545 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QEZ34_RS08935 | 1836549..1837418 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| QEZ34_RS08940 | 1837435..1837773 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1837896..1838041 | - | 146 | - | - | Antitoxin |
| - | 1837932..1838034 | + | 103 | - | - | Toxin |
| QEZ34_RS08945 | 1838409..1838552 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QEZ34_RS08950 | 1838657..1839625 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QEZ34_RS08955 | 1839782..1840435 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| QEZ34_RS08960 | 1840432..1840623 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QEZ34_RS08965 | 1840721..1840960 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QEZ34_RS08970 | 1841076..1842509 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T278975 NZ_CP123430:1837932-1838034 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT278975 NZ_CP123430:c1838041-1837896 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
