Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 401952..402483 Replicon chromosome
Accession NC_018002
Organism Sulfurospirillum barnesii SES-3

Toxin (Protein)


Gene name relE Uniprot ID I3XUX7
Locus tag SULBA_RS02160 Protein ID WP_014768631.1
Coordinates 402193..402483 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID I3XUX6
Locus tag SULBA_RS02155 Protein ID WP_014768630.1
Coordinates 401952..402203 (+) Length 84 a.a.

Genomic Context

SULBA_RS02130SULBA_RS02135SULBA_RS02140SULBA_RS02145SULBA_RS02155SULBA_RS02160SULBA_RS02170SULBA_RS02175SULBA_RS02180SULBA_RS02185SULBA_RS02190SULBA_RS02150SULBA_RS02165
Location: 397110..398036 (927 bp)
Type: Others
Protein ID: WP_014768625.1
Location: 398036..398524 (489 bp)
Type: Others
Protein ID: WP_014768626.1
Location: 398533..399906 (1374 bp)
Type: Others
Protein ID: WP_014768627.1
Location: 399910..401172 (1263 bp)
Type: Others
Protein ID: WP_014768628.1
Location: 401952..402203 (252 bp)
Type: Antitoxin
Protein ID: WP_014768630.1
Location: 402193..402483 (291 bp)
Type: Toxin
Protein ID: WP_014768631.1
Location: 403792..404187 (396 bp)
Type: Others
Protein ID: WP_014768633.1
Location: 404184..404843 (660 bp)
Type: Others
Protein ID: WP_172634065.1
Location: 404920..405351 (432 bp)
Type: Others
Protein ID: WP_014768635.1
Location: 405474..406292 (819 bp)
Type: Others
Protein ID: WP_014768636.1
Location: 406485..407267 (783 bp)
Type: Others
Protein ID: WP_041671758.1
Location: 401224..401769 (546 bp)
Type: Others
Protein ID: WP_014768629.1
Location: 402508..403680 (1173 bp)
Type: Others
Protein ID: WP_014768632.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
SULBA_RS02130397110..398036+927WP_014768625.1ornithine carbamoyltransferase-
SULBA_RS02135398036..398524+489WP_014768626.1DUF2603 domain-containing protein-
SULBA_RS02140398533..399906+1374WP_014768627.1oxygen-independent coproporphyrinogen III oxidase-
SULBA_RS02145399910..401172+1263WP_014768628.1(Fe-S)-binding protein-
SULBA_RS02150401224..401769-546WP_014768629.1hypothetical protein-
SULBA_RS02155401952..402203+252WP_014768630.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
SULBA_RS02160402193..402483+291WP_014768631.1type II toxin-antitoxin system RelE/ParE family toxinToxin
SULBA_RS02165402508..403680-1173WP_014768632.1sugar transporter-
SULBA_RS02170403792..404187+396WP_014768633.1SEC-C domain-containing protein-
SULBA_RS02175404184..404843+660WP_172634065.1cyclic nucleotide-binding domain-containing protein-
SULBA_RS02180404920..405351+432WP_014768635.1Hsp20/alpha crystallin family protein-
SULBA_RS02185405474..406292+819WP_014768636.1prolipoprotein diacylglyceryl transferase-
SULBA_RS02190406485..407267+783WP_041671758.1fumarate reductase cytochrome b subunit-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11487.49 Da        Isoelectric Point: 10.1568

>T27896 WP_014768631.1 NC_018002:402193-402483 [Sulfurospirillum barnesii SES-3]
MRYELEFHPQALKEWKNLGETIKEQFKKKLQERLENPKVPKDKLVGFDAVYKIKLKTAGYRLAYEVIDERVVIIVLVIGK
RENNKVYNALYSRFEK

Download         Length: 291 bp

>T27896 NC_018002:402193-402483 [Sulfurospirillum barnesii SES-3]
ATGCGCTATGAATTAGAATTTCACCCACAAGCGCTAAAAGAGTGGAAAAATCTAGGTGAAACCATCAAAGAGCAGTTTAA
AAAGAAACTGCAAGAGAGACTGGAAAACCCAAAAGTTCCTAAAGACAAACTCGTTGGATTTGATGCAGTCTACAAAATCA
AACTCAAAACAGCAGGATACAGATTAGCCTATGAAGTGATTGATGAAAGAGTGGTTATTATCGTTTTAGTGATAGGAAAA
CGTGAAAACAATAAAGTGTATAATGCTCTGTATTCACGTTTTGAGAAGTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9261.73 Da        Isoelectric Point: 4.6653

>AT27896 WP_014768630.1 NC_018002:401952-402203 [Sulfurospirillum barnesii SES-3]
MQPILSNYTASITELKKSPTQILENAGEEVVAILNHNVVSAYLVPSKTYEKLMAMLDDYMLSKEVISRQSEAYTPIKVTL
DAL

Download         Length: 252 bp

>AT27896 NC_018002:401952-402203 [Sulfurospirillum barnesii SES-3]
ATGCAACCTATTTTATCAAACTACACAGCAAGCATTACTGAGCTTAAAAAATCACCCACGCAAATTCTTGAAAATGCAGG
CGAAGAAGTTGTTGCTATACTCAATCATAATGTGGTAAGTGCTTACCTTGTTCCTTCTAAAACCTATGAAAAATTGATGG
CGATGCTGGATGATTATATGCTCTCTAAAGAAGTTATAAGTAGACAAAGCGAAGCTTACACACCTATTAAAGTAACGCTT
GATGCGCTATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBI3XUX7

Antitoxin

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Source
ID
Structure
AlphaFold DBI3XUX6

References