Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 739255..739886 Replicon chromosome
Accession NZ_CP123351
Organism Agrobacterium pusense strain GV2

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QE155_RS03645 Protein ID WP_035207667.1
Coordinates 739488..739886 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QE155_RS03640 Protein ID WP_035207666.1
Coordinates 739255..739488 (+) Length 78 a.a.

Genomic Context

QE155_RS03620QE155_RS03625QE155_RS03630QE155_RS03635QE155_RS03640QE155_RS03645QE155_RS03650QE155_RS03655QE155_RS03660
Location: 734656..735918 (1263 bp)
Type: Others
Protein ID: WP_004441057.1
Location: 736281..737501 (1221 bp)
Type: Others
Protein ID: WP_004441060.1
Location: 737573..738460 (888 bp)
Type: Others
Protein ID: WP_006700159.1
Location: 738465..739127 (663 bp)
Type: Others
Protein ID: WP_004441063.1
Location: 739255..739488 (234 bp)
Type: Antitoxin
Protein ID: WP_035207666.1
Location: 739488..739886 (399 bp)
Type: Toxin
Protein ID: WP_035207667.1
Location: 739902..740732 (831 bp)
Type: Others
Protein ID: WP_035207668.1
Location: 740732..741754 (1023 bp)
Type: Others
Protein ID: WP_077987860.1
Location: 741781..742728 (948 bp)
Type: Others
Protein ID: WP_006700162.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QE155_RS03620734656..735918+1263WP_004441057.1beta-ketoacyl-ACP synthase II-
QE155_RS03625736281..737501+1221WP_004441060.1endolytic transglycosylase MltG-
QE155_RS03630737573..738460+888WP_006700159.1YicC/YloC family endoribonuclease-
QE155_RS03635738465..739127+663WP_004441063.1guanylate kinase-
QE155_RS03640739255..739488+234WP_035207666.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
QE155_RS03645739488..739886+399WP_035207667.1type II toxin-antitoxin system VapC family toxinToxin
QE155_RS03650739902..740732-831WP_035207668.116S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA-
QE155_RS03655740732..741754-1023WP_077987860.14-hydroxythreonine-4-phosphate dehydrogenase PdxA-
QE155_RS03660741781..742728-948WP_006700162.1peptidylprolyl isomerase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-124)

Antitoxin

SpoVT-AbrB domain

(7-56)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14855.11 Da        Isoelectric Point: 7.1886

>T278937 WP_035207667.1 NZ_CP123351:739488-739886 [Agrobacterium pusense]
MLRYMLDTNICIYVMKTYPTDLRDKFNSLADELCISSITLGELCYGAEKSARRRENLGAIENFTARLEVLPFADKAASHY
GQIRAELARAGTPCGVHDMQIGGHARSEGLIVVTNNMREFVRMPGLRVENWV

Download         Length: 399 bp

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8768.97 Da        Isoelectric Point: 5.8064

>AT278937 WP_035207666.1 NZ_CP123351:739255-739488 [Agrobacterium pusense]
MATSTVFTSNRSQAVRLPKTVAFPDDVHKVEILKVGLTRIIVPYGKRWDDLFLSGPRATDDFMSSREEPPLEERDSF

Download         Length: 234 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References