Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-CC2985
Location 442109..442653 Replicon chromosome
Accession NZ_CP123351
Organism Agrobacterium pusense strain GV2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QE155_RS02130 Protein ID WP_175477655.1
Coordinates 442363..442653 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QE155_RS02125 Protein ID WP_035209434.1
Coordinates 442109..442360 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QE155_RS02100 437207..437896 - 690 WP_003520496.1 HAD family hydrolase -
QE155_RS02105 438111..438791 + 681 WP_006699981.1 GntR family transcriptional regulator -
QE155_RS02110 438832..439293 + 462 WP_035209498.1 DUF1284 domain-containing protein -
QE155_RS02115 439253..440353 - 1101 WP_035209433.1 hypothetical protein -
QE155_RS02120 440590..441735 + 1146 WP_004440405.1 site-specific DNA-methyltransferase -
QE155_RS02125 442109..442360 + 252 WP_035209434.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QE155_RS02130 442363..442653 + 291 WP_175477655.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QE155_RS02135 442685..443296 - 612 WP_022555751.1 HAD family phosphatase -
QE155_RS02140 443293..444396 - 1104 WP_035209437.1 A/G-specific adenine glycosylase -
QE155_RS02145 444494..445021 + 528 WP_006699987.1 DUF721 domain-containing protein -
QE155_RS02150 445150..445830 + 681 WP_035209438.1 DsbA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(8-61)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11225.72 Da        Isoelectric Point: 6.6456

>T278936 WP_175477655.1 NZ_CP123351:442363-442653 [Agrobacterium pusense]
MGFRLSLPAEEDAIRIAQEGIDLFGPQQARKYHRELFAIFDLISRNPRIARERNELSPSVRIHPFRAHLVVYRVEADDDV
LIVRVRHGHEDWGNEP

Download         Length: 291 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9328.56 Da        Isoelectric Point: 8.5545

>AT278936 WP_035209434.1 NZ_CP123351:442109-442360 [Agrobacterium pusense]
MVTMNISLPGQMKEWVEAQSKTGRYSNASDYVRDLIRKDQERSEKIAAMQGLVDEGLRAPSGHRSEDALFAEAEARSMKR
KIG

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References