Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-CC2985
Location 442109..442653 Replicon chromosome
Accession NZ_CP123351
Organism Agrobacterium pusense strain GV2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QE155_RS02130 Protein ID WP_175477655.1
Coordinates 442363..442653 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QE155_RS02125 Protein ID WP_035209434.1
Coordinates 442109..442360 (+) Length 84 a.a.

Genomic Context

QE155_RS02105QE155_RS02110QE155_RS02120QE155_RS02125QE155_RS02130QE155_RS02145QE155_RS02150QE155_RS02100QE155_RS02115QE155_RS02135QE155_RS02140
Location: 438111..438791 (681 bp)
Type: Others
Protein ID: WP_006699981.1
Location: 438832..439293 (462 bp)
Type: Others
Protein ID: WP_035209498.1
Location: 440590..441735 (1146 bp)
Type: Others
Protein ID: WP_004440405.1
Location: 442109..442360 (252 bp)
Type: Antitoxin
Protein ID: WP_035209434.1
Location: 442363..442653 (291 bp)
Type: Toxin
Protein ID: WP_175477655.1
Location: 444494..445021 (528 bp)
Type: Others
Protein ID: WP_006699987.1
Location: 445150..445830 (681 bp)
Type: Others
Protein ID: WP_035209438.1
Location: 437207..437896 (690 bp)
Type: Others
Protein ID: WP_003520496.1
Location: 439253..440353 (1101 bp)
Type: Others
Protein ID: WP_035209433.1
Location: 442685..443296 (612 bp)
Type: Others
Protein ID: WP_022555751.1
Location: 443293..444396 (1104 bp)
Type: Others
Protein ID: WP_035209437.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QE155_RS02100437207..437896-690WP_003520496.1HAD family hydrolase-
QE155_RS02105438111..438791+681WP_006699981.1GntR family transcriptional regulator-
QE155_RS02110438832..439293+462WP_035209498.1DUF1284 domain-containing protein-
QE155_RS02115439253..440353-1101WP_035209433.1hypothetical protein-
QE155_RS02120440590..441735+1146WP_004440405.1site-specific DNA-methyltransferase-
QE155_RS02125442109..442360+252WP_035209434.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
QE155_RS02130442363..442653+291WP_175477655.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QE155_RS02135442685..443296-612WP_022555751.1HAD family phosphatase-
QE155_RS02140443293..444396-1104WP_035209437.1A/G-specific adenine glycosylase-
QE155_RS02145444494..445021+528WP_006699987.1DUF721 domain-containing protein-
QE155_RS02150445150..445830+681WP_035209438.1DsbA family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(8-61)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11225.72 Da        Isoelectric Point: 6.6456

>T278936 WP_175477655.1 NZ_CP123351:442363-442653 [Agrobacterium pusense]
MGFRLSLPAEEDAIRIAQEGIDLFGPQQARKYHRELFAIFDLISRNPRIARERNELSPSVRIHPFRAHLVVYRVEADDDV
LIVRVRHGHEDWGNEP

Download         Length: 291 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9328.56 Da        Isoelectric Point: 8.5545

>AT278936 WP_035209434.1 NZ_CP123351:442109-442360 [Agrobacterium pusense]
MVTMNISLPGQMKEWVEAQSKTGRYSNASDYVRDLIRKDQERSEKIAAMQGLVDEGLRAPSGHRSEDALFAEAEARSMKR
KIG

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References