Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2000229..2000372 | Replicon | chromosome |
| Accession | NZ_CP123282 | ||
| Organism | Salmonella sp. SA14318 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2000267..2000370 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2000229..2000372 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN32_RS09495 | 1996646..1997351 | - | 706 | Protein_1852 | exodeoxyribonuclease X | - |
| QEN32_RS09500 | 1997375..1998031 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| QEN32_RS09505 | 1998139..1998369 | - | 231 | WP_000856227.1 | DNA polymerase III subunit theta | - |
| QEN32_RS09510 | 1998507..1998881 | + | 375 | WP_000168394.1 | CopC domain-containing protein YobA | - |
| QEN32_RS09515 | 1998882..1999757 | + | 876 | WP_000979699.1 | copper homeostasis membrane protein CopD | - |
| QEN32_RS09520 | 1999774..2000127 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2000229..2000372 | - | 144 | - | - | Antitoxin |
| - | 2000267..2000370 | + | 104 | - | - | Toxin |
| QEN32_RS09525 | 2000510..2000857 | - | 348 | Protein_1858 | tyrosine-type recombinase/integrase | - |
| QEN32_RS09530 | 2000869..2000952 | + | 84 | Protein_1859 | phage tail protein | - |
| QEN32_RS09535 | 2001125..2003545 | + | 2421 | WP_265322383.1 | type III secretion system effector SspH3 | - |
| QEN32_RS09540 | 2003647..2004175 | + | 529 | Protein_1861 | transposase | - |
| QEN32_RS09545 | 2004321..2004461 | - | 141 | WP_001640444.1 | hypothetical protein | - |
| QEN32_RS09550 | 2004630..2004896 | - | 267 | WP_077248438.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2003837..2004175 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278901 NZ_CP123282:2000267-2000370 [Salmonella sp. SA14318]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT278901 NZ_CP123282:c2000372-2000229 [Salmonella sp. SA14318]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
