Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 330669..330813 | Replicon | chromosome |
| Accession | NZ_CP123280 | ||
| Organism | Salmonella sp. SA17155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 330709..330812 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 330669..330813 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN30_RS01845 | 327095..327793 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| QEN30_RS01850 | 327817..328473 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| QEN30_RS01855 | 328581..328811 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| QEN30_RS01860 | 328949..329323 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| QEN30_RS01865 | 329324..330199 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| QEN30_RS01870 | 330216..330569 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 330669..330813 | - | 145 | - | - | Antitoxin |
| - | 330709..330812 | + | 104 | - | - | Toxin |
| QEN30_RS01875 | 330943..332019 | - | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| QEN30_RS01880 | 331985..332266 | - | 282 | WP_023234152.1 | excisionase | - |
| QEN30_RS01885 | 332373..332561 | - | 189 | WP_052929118.1 | DUF1187 family protein | - |
| - | 332379..332555 | + | 177 | NuclAT_0 | - | - |
| - | 332379..332555 | + | 177 | NuclAT_0 | - | - |
| - | 332379..332555 | + | 177 | NuclAT_0 | - | - |
| - | 332379..332555 | + | 177 | NuclAT_0 | - | - |
| QEN30_RS01890 | 332554..332748 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QEN30_RS01895 | 332805..333614 | - | 810 | WP_052929117.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 325009..405757 | 80748 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278875 NZ_CP123280:330709-330812 [Salmonella sp. SA17155]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT278875 NZ_CP123280:c330813-330669 [Salmonella sp. SA17155]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
