Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2100089..2100360 | Replicon | chromosome |
| Accession | NZ_CP123266 | ||
| Organism | Escherichia coli strain YZLc23-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2100219..2100322 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2100089..2100360 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4686_RS10145 | 2096644..2097306 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4686_RS10150 | 2097330..2097986 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4686_RS10155 | 2098088..2098318 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4686_RS10160 | 2098457..2098831 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N4686_RS10165 | 2098835..2099707 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N4686_RS10170 | 2099720..2100061 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2100089..2100360 | - | 272 | - | - | Antitoxin |
| - | 2100219..2100322 | + | 104 | - | - | Toxin |
| N4686_RS10175 | 2100457..2101113 | + | 657 | WP_024258105.1 | protein-serine/threonine phosphatase | - |
| N4686_RS10180 | 2101114..2101305 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N4686_RS10185 | 2101410..2101646 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4686_RS10190 | 2101764..2103203 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278853 NZ_CP123266:2100219-2100322 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278853 NZ_CP123266:c2100360-2100089 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
