Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047497..2047768 | Replicon | chromosome |
| Accession | NZ_CP123260 | ||
| Organism | Escherichia coli strain YZLc4-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047627..2047730 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047497..2047768 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4697_RS09910 | 2044052..2044714 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4697_RS09915 | 2044738..2045394 | - | 657 | WP_000011659.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4697_RS09920 | 2045496..2045726 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4697_RS09925 | 2045865..2046239 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N4697_RS09930 | 2046243..2047115 | + | 873 | WP_106664700.1 | copper homeostasis membrane protein CopD | - |
| N4697_RS09935 | 2047128..2047469 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2047497..2047768 | - | 272 | - | - | Antitoxin |
| - | 2047627..2047730 | + | 104 | - | - | Toxin |
| N4697_RS09940 | 2047865..2048521 | + | 657 | WP_063625304.1 | protein-serine/threonine phosphatase | - |
| N4697_RS09945 | 2048522..2048713 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N4697_RS09950 | 2048818..2049054 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4697_RS09955 | 2049172..2050611 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278826 NZ_CP123260:2047627-2047730 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278826 NZ_CP123260:c2047768-2047497 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
