Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052573..2052844 | Replicon | chromosome |
| Accession | NZ_CP123255 | ||
| Organism | Escherichia coli strain YZMc17-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2052703..2052806 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052573..2052844 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4680_RS09845 | 2049128..2049790 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4680_RS09850 | 2049814..2050470 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4680_RS09855 | 2050572..2050802 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4680_RS09860 | 2050941..2051315 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N4680_RS09865 | 2051319..2052191 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| N4680_RS09870 | 2052204..2052545 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2052573..2052844 | - | 272 | - | - | Antitoxin |
| - | 2052703..2052806 | + | 104 | - | - | Toxin |
| N4680_RS09875 | 2052941..2053597 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| N4680_RS09880 | 2053598..2053789 | - | 192 | WP_000457842.1 | YebW family protein | - |
| N4680_RS09885 | 2053894..2054130 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4680_RS09890 | 2054248..2055687 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278802 NZ_CP123255:2052703-2052806 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278802 NZ_CP123255:c2052844-2052573 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
