Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091810..2092081 | Replicon | chromosome |
| Accession | NZ_CP123244 | ||
| Organism | Escherichia coli strain YZMc3-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091940..2092043 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091810..2092081 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4691_RS10025 | 2088365..2089027 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4691_RS10030 | 2089051..2089707 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4691_RS10035 | 2089809..2090039 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4691_RS10040 | 2090178..2090552 | + | 375 | WP_021556896.1 | CopC domain-containing protein YobA | - |
| N4691_RS10045 | 2090556..2091428 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| N4691_RS10050 | 2091441..2091782 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2091810..2092081 | - | 272 | - | - | Antitoxin |
| - | 2091940..2092043 | + | 104 | - | - | Toxin |
| N4691_RS10055 | 2092178..2092834 | + | 657 | WP_021556895.1 | protein-serine/threonine phosphatase | - |
| N4691_RS10060 | 2092835..2093026 | - | 192 | WP_001313035.1 | YebW family protein | - |
| N4691_RS10065 | 2093131..2093367 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4691_RS10070 | 2093485..2094924 | - | 1440 | WP_024227172.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278763 NZ_CP123244:2091940-2092043 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278763 NZ_CP123244:c2092081-2091810 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
