Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2291935..2292206 | Replicon | chromosome |
| Accession | NZ_CP123240 | ||
| Organism | Escherichia coli strain YZLc1-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2292065..2292168 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2291935..2292206 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4725_RS11195 | 2288490..2289152 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4725_RS11200 | 2289176..2289832 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4725_RS11205 | 2289934..2290164 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4725_RS11210 | 2290303..2290677 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N4725_RS11215 | 2290681..2291553 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| N4725_RS11220 | 2291566..2291907 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2291935..2292206 | - | 272 | - | - | Antitoxin |
| - | 2292065..2292168 | + | 104 | - | - | Toxin |
| N4725_RS11225 | 2292303..2292959 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| N4725_RS11230 | 2292960..2293151 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N4725_RS11235 | 2293256..2293492 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4725_RS11240 | 2293610..2295049 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2284625..2308046 | 23421 | |
| - | inside | Prophage | - | - | 2282762..2308046 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278733 NZ_CP123240:2292065-2292168 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278733 NZ_CP123240:c2292206-2291935 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
