Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2034660..2034931 | Replicon | chromosome |
| Accession | NZ_CP123046 | ||
| Organism | Escherichia coli strain EC0430 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2034790..2034893 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2034660..2034931 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDU34_RS09765 | 2031215..2031877 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDU34_RS09770 | 2031901..2032557 | - | 657 | WP_112016036.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDU34_RS09775 | 2032659..2032889 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDU34_RS09780 | 2033028..2033402 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QDU34_RS09785 | 2033406..2034278 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QDU34_RS09790 | 2034291..2034632 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2034660..2034931 | - | 272 | - | - | Antitoxin |
| - | 2034790..2034893 | + | 104 | - | - | Toxin |
| QDU34_RS09795 | 2035028..2035684 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| QDU34_RS09800 | 2035685..2035876 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDU34_RS09805 | 2035981..2036217 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDU34_RS09810 | 2036335..2037774 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278572 NZ_CP123046:2034790-2034893 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278572 NZ_CP123046:c2034931-2034660 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
