Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 261702..262288 Replicon chromosome
Accession NZ_CP123046
Organism Escherichia coli strain EC0430

Toxin (Protein)


Gene name hicA Uniprot ID A0A0H0RQZ4
Locus tag QDU34_RS01190 Protein ID WP_042014162.1
Coordinates 261702..261932 (+) Length 77 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag QDU34_RS01195 Protein ID WP_000593555.1
Coordinates 261929..262288 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QDU34_RS01180 (257739) 257739..260474 + 2736 WP_000149132.1 ribosome-associated ATPase/putative transporter RbbA -
QDU34_RS01185 (260474) 260474..261598 + 1125 WP_001314210.1 ABC transporter permease -
QDU34_RS01190 (261702) 261702..261932 + 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin Toxin
QDU34_RS01195 (261929) 261929..262288 + 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
QDU34_RS01200 (262408) 262408..262809 - 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
QDU34_RS01205 (262815) 262815..263621 - 807 WP_000173666.1 nickel import ATP-binding protein NikE -
QDU34_RS01210 (263618) 263618..264382 - 765 WP_001136236.1 nickel import ATP-binding protein NikD -
QDU34_RS01215 (264382) 264382..265215 - 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
QDU34_RS01220 (265212) 265212..266156 - 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(15-65)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 77 a.a.        Molecular weight: 8419.79 Da        Isoelectric Point: 8.5518

>T278565 WP_042014162.1 NZ_CP123046:261702-261932 [Escherichia coli]
MDQLFKSPLPQGIKWTDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP

Download         Length: 231 bp

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT278565 WP_000593555.1 NZ_CP123046:261929-262288 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H0RQZ4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References