Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1990323..1990468 | Replicon | chromosome |
| Accession | NZ_CP123040 | ||
| Organism | Klebsiella pneumoniae strain KP160802 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1990359..1990461 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1990323..1990468 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDE57_RS09670 | 1985453..1987513 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QDE57_RS09675 | 1987517..1988176 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QDE57_RS09680 | 1988255..1988485 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QDE57_RS09685 | 1988598..1988972 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QDE57_RS09690 | 1988976..1989845 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| QDE57_RS09695 | 1989862..1990200 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1990323..1990468 | - | 146 | - | - | Antitoxin |
| - | 1990359..1990461 | + | 103 | - | - | Toxin |
| QDE57_RS09700 | 1990836..1990979 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QDE57_RS09705 | 1991084..1992052 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QDE57_RS09710 | 1992209..1992862 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| QDE57_RS09715 | 1992859..1993050 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QDE57_RS09720 | 1993148..1993387 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QDE57_RS09725 | 1993503..1994936 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T278540 NZ_CP123040:1990359-1990461 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT278540 NZ_CP123040:c1990468-1990323 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
