Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1721784..1721952 | Replicon | chromosome |
| Accession | NC_017933 | ||
| Organism | Cronobacter sakazakii ES15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1721846..1721949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1721784..1721952 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ES15_RS08155 | 1716935..1718998 | + | 2064 | WP_014728642.1 | oligopeptidase B | - |
| ES15_RS08160 | 1718995..1719657 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| ES15_RS08165 | 1719729..1719959 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| ES15_RS08170 | 1720106..1720480 | + | 375 | WP_014728643.1 | CopC domain-containing protein YobA | - |
| ES15_RS08175 | 1720485..1721354 | + | 870 | WP_014728644.1 | copper homeostasis membrane protein CopD | - |
| ES15_RS08180 | 1721369..1721707 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1721784..1721952 | - | 169 | - | - | Antitoxin |
| - | 1721846..1721949 | + | 104 | - | - | Toxin |
| ES15_RS21035 | 1722176..1722736 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| ES15_RS08190 | 1722690..1723025 | + | 336 | WP_007868609.1 | hypothetical protein | - |
| ES15_RS08195 | 1723821..1724465 | + | 645 | WP_014728645.1 | metallophosphoesterase | - |
| ES15_RS08200 | 1724466..1724657 | - | 192 | WP_014728646.1 | YebW family protein | - |
| ES15_RS08205 | 1724782..1725021 | - | 240 | WP_004386676.1 | YebV family protein | - |
| ES15_RS08210 | 1725134..1726576 | - | 1443 | WP_014728647.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27851 NC_017933:1721846-1721949 [Cronobacter sakazakii ES15]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT27851 NC_017933:c1721952-1721784 [Cronobacter sakazakii ES15]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
