Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079744..2080015 | Replicon | chromosome |
| Accession | NZ_CP123029 | ||
| Organism | Escherichia coli strain 20-20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079874..2079977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079744..2080015 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN57_RS10015 | 2076299..2076961 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QEN57_RS10020 | 2076985..2077641 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QEN57_RS10025 | 2077743..2077973 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QEN57_RS10030 | 2078112..2078486 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QEN57_RS10035 | 2078490..2079362 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QEN57_RS10040 | 2079375..2079716 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2079744..2080015 | - | 272 | - | - | Antitoxin |
| - | 2079874..2079977 | + | 104 | - | - | Toxin |
| QEN57_RS10045 | 2080112..2080768 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QEN57_RS10050 | 2080769..2080960 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QEN57_RS10055 | 2081065..2081301 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QEN57_RS10060 | 2081419..2082858 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2036831..2095853 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278495 NZ_CP123029:2079874-2079977 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278495 NZ_CP123029:c2080015-2079744 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
