Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2101666..2101937 | Replicon | chromosome |
| Accession | NZ_CP123024 | ||
| Organism | Escherichia coli strain 20-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2101796..2101899 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2101666..2101937 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN53_RS10160 | 2098221..2098883 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QEN53_RS10165 | 2098907..2099563 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QEN53_RS10170 | 2099665..2099895 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QEN53_RS10175 | 2100034..2100408 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QEN53_RS10180 | 2100412..2101284 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QEN53_RS10185 | 2101297..2101638 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2101666..2101937 | - | 272 | - | - | Antitoxin |
| - | 2101796..2101899 | + | 104 | - | - | Toxin |
| QEN53_RS10190 | 2102034..2102690 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QEN53_RS10195 | 2102691..2102882 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QEN53_RS10200 | 2102987..2103223 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QEN53_RS10205 | 2103341..2104780 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2058753..2117775 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278470 NZ_CP123024:2101796-2101899 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278470 NZ_CP123024:c2101937-2101666 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
