Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2108945..2109216 | Replicon | chromosome |
| Accession | NZ_CP123017 | ||
| Organism | Escherichia coli strain 19-7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109075..2109178 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2108945..2109216 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN55_RS10195 | 2105500..2106162 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QEN55_RS10200 | 2106186..2106842 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QEN55_RS10205 | 2106944..2107174 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QEN55_RS10210 | 2107313..2107687 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QEN55_RS10215 | 2107691..2108563 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QEN55_RS10220 | 2108576..2108917 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2108945..2109216 | - | 272 | - | - | Antitoxin |
| - | 2109075..2109178 | + | 104 | - | - | Toxin |
| QEN55_RS10225 | 2109313..2109969 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QEN55_RS10230 | 2109970..2110161 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QEN55_RS10235 | 2110266..2110502 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QEN55_RS10240 | 2110620..2112059 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278444 NZ_CP123017:2109075-2109178 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278444 NZ_CP123017:c2109216-2108945 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
