Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2104969..2105240 | Replicon | chromosome |
| Accession | NZ_CP123013 | ||
| Organism | Escherichia coli strain 18-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105099..2105202 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2104969..2105240 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN56_RS10175 | 2101524..2102186 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QEN56_RS10180 | 2102210..2102866 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QEN56_RS10185 | 2102968..2103198 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QEN56_RS10190 | 2103337..2103711 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QEN56_RS10195 | 2103715..2104587 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QEN56_RS10200 | 2104600..2104941 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2104969..2105240 | - | 272 | - | - | Antitoxin |
| - | 2105099..2105202 | + | 104 | - | - | Toxin |
| QEN56_RS10205 | 2105337..2105993 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QEN56_RS10210 | 2105994..2106185 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QEN56_RS10215 | 2106290..2106526 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QEN56_RS10220 | 2106644..2108083 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2062056..2121078 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278418 NZ_CP123013:2105099-2105202 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278418 NZ_CP123013:c2105240-2104969 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
