278319

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 1636783..1637302 Replicon chromosome
Accession NZ_CP123000
Organism Neorhizobium petrolearium strain OS53

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag QEO92_RS08435 Protein ID WP_227702706.1
Coordinates 1637021..1637302 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QEO92_RS08430 Protein ID WP_227702705.1
Coordinates 1636783..1637031 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QEO92_RS08410 (QEO92_08410) 1632378..1633142 + 765 WP_227702701.1 DUF1028 domain-containing protein -
QEO92_RS08415 (QEO92_08415) 1633139..1634950 + 1812 WP_227702702.1 ABC transporter ATP-binding protein -
QEO92_RS08420 (QEO92_08420) 1634962..1635765 - 804 WP_227702703.1 DNA repair protein RadC -
QEO92_RS08425 (QEO92_08425) 1635768..1636604 - 837 WP_227702704.1 type I methionyl aminopeptidase -
QEO92_RS08430 (QEO92_08430) 1636783..1637031 + 249 WP_227702705.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QEO92_RS08435 (QEO92_08435) 1637021..1637302 + 282 WP_227702706.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QEO92_RS08440 (QEO92_08440) 1637299..1638006 - 708 WP_227702707.1 DNA/RNA nuclease SfsA -
QEO92_RS08445 (QEO92_08445) 1638019..1639866 - 1848 WP_227702708.1 class I poly(R)-hydroxyalkanoic acid synthase -
QEO92_RS08450 (QEO92_08450) 1639991..1640392 + 402 WP_227702709.1 hypothetical protein -
QEO92_RS08455 (QEO92_08455) 1640498..1641715 + 1218 WP_037155344.1 LL-diaminopimelate aminotransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10940.76 Da        Isoelectric Point: 10.7023

>T278319 WP_227702706.1 NZ_CP123000:1637021-1637302 [Neorhizobium petrolearium]
MSYELAFLDVALKEWRKLDANIRDQFRKKLAERLENPRVPSAQLYGAKDRYKVKLRSAGYRLVYEVRDAQLIVLVIAVGR
RDRNAVYKAAEKR

Download         Length: 282 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8735.07 Da        Isoelectric Point: 4.1370

>AT278319 WP_227702705.1 NZ_CP123000:1636783-1637031 [Neorhizobium petrolearium]
MVSVVLAEVTASVSELKRNPMGTVAAGEGAPVAILNRNEPAFYCIPAKAYEVMMDRLEDLELNALADSRAGEAVVKVTLD
EL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References