Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2027006..2027277 Replicon chromosome
Accession NZ_CP122929
Organism Escherichia coli strain ETEC1702

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2027136..2027239 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2027006..2027277 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QDX05_RS10025 2023561..2024223 - 663 WP_000944256.1 exodeoxyribonuclease X -
QDX05_RS10030 2024247..2024903 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
QDX05_RS10035 2025005..2025235 - 231 WP_000916763.1 DNA polymerase III subunit theta -
QDX05_RS10040 2025374..2025748 + 375 WP_000168747.1 CopC domain-containing protein YobA -
QDX05_RS10045 2025752..2026624 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
QDX05_RS10050 2026637..2026978 + 342 WP_000976476.1 YebY family protein -
- 2027006..2027277 - 272 - - Antitoxin
- 2027136..2027239 + 104 - - Toxin
QDX05_RS10055 2027374..2028030 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
QDX05_RS10060 2028031..2028222 - 192 WP_000457842.1 YebW family protein -
QDX05_RS10065 2028327..2028563 - 237 WP_001295499.1 YebV family protein -
QDX05_RS10070 2028681..2030120 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T278240 NZ_CP122929:2027136-2027239 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT278240 NZ_CP122929:c2027277-2027006 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References