Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068727..2068961 | Replicon | chromosome |
| Accession | NZ_CP122923 | ||
| Organism | Escherichia coli strain ETEC1703 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068857..2068960 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068727..2068961 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX14_RS09995 | 2065283..2065945 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QDX14_RS10000 | 2065968..2066624 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDX14_RS10005 | 2066726..2066956 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDX14_RS10010 | 2067095..2067469 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDX14_RS10015 | 2067473..2068345 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QDX14_RS10020 | 2068358..2068699 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2068727..2068961 | - | 235 | - | - | Antitoxin |
| - | 2068857..2068960 | + | 104 | - | - | Toxin |
| QDX14_RS10025 | 2069092..2070168 | - | 1077 | WP_053508942.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| QDX14_RS10030 | 2070134..2070415 | - | 282 | WP_077248935.1 | excisionase | - |
| QDX14_RS10035 | 2070522..2070710 | - | 189 | WP_021529595.1 | DUF1187 family protein | - |
| - | 2070526..2070704 | + | 179 | NuclAT_1 | - | - |
| - | 2070526..2070704 | + | 179 | NuclAT_1 | - | - |
| - | 2070526..2070704 | + | 179 | NuclAT_1 | - | - |
| - | 2070526..2070704 | + | 179 | NuclAT_1 | - | - |
| QDX14_RS10040 | 2070703..2070897 | - | 195 | WP_187182214.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QDX14_RS10045 | 2070961..2072049 | - | 1089 | WP_230905604.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2063226..2134919 | 71693 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278208 NZ_CP122923:2068857-2068960 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT278208 NZ_CP122923:c2068961-2068727 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
