Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1795531..1795672 | Replicon | chromosome |
| Accession | NC_017910 | ||
| Organism | Shimwellia blattae DSM 4481 = NBRC 105725 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1795534..1795637 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1795531..1795672 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBL_RS08270 | 1790830..1792266 | + | 1437 | Protein_1622 | VENN motif pre-toxin domain-containing protein | - |
| EBL_RS20760 | 1793434..1793646 | + | 213 | WP_014715981.1 | hypothetical protein | - |
| EBL_RS08290 | 1794030..1794794 | - | 765 | WP_002445008.1 | hypothetical protein | - |
| EBL_RS08295 | 1794927..1795238 | - | 312 | WP_002445010.1 | hypothetical protein | - |
| - | 1795531..1795672 | + | 142 | - | - | Antitoxin |
| - | 1795534..1795637 | - | 104 | - | - | Toxin |
| EBL_RS08300 | 1795780..1796121 | - | 342 | WP_002445011.1 | YebY family protein | - |
| EBL_RS08305 | 1796143..1797015 | - | 873 | WP_002445013.1 | copper homeostasis membrane protein CopD | - |
| EBL_RS08310 | 1797022..1797402 | - | 381 | WP_002445015.1 | copper homeostasis periplasmic binding protein CopC | - |
| EBL_RS08315 | 1797838..1798233 | + | 396 | WP_002445017.1 | DUF937 domain-containing protein | - |
| EBL_RS08320 | 1798295..1798633 | + | 339 | WP_002445019.1 | hypothetical protein | - |
| EBL_RS08325 | 1798752..1799240 | + | 489 | WP_002445021.1 | serine protease inhibitor ecotin | - |
| EBL_RS08335 | 1799502..1800434 | - | 933 | WP_002445023.1 | ABC transporter substrate-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27816 NC_017910:c1795637-1795534 [Shimwellia blattae DSM 4481 = NBRC 105725]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT27816 NC_017910:1795531-1795672 [Shimwellia blattae DSM 4481 = NBRC 105725]
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
