Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
| Location | 57043..57602 | Replicon | plasmid unnamed3 |
| Accession | NZ_CP122847 | ||
| Organism | Escherichia coli strain ETEC1722 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | U9YB49 |
| Locus tag | QDX00_RS23575 | Protein ID | WP_000421259.1 |
| Coordinates | 57327..57602 (+) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U9Y625 |
| Locus tag | QDX00_RS23570 | Protein ID | WP_001178087.1 |
| Coordinates | 57043..57327 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX00_RS23550 (52690) | 52690..53223 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| QDX00_RS23555 (53665) | 53665..53952 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| QDX00_RS23560 (53870) | 53870..54148 | - | 279 | WP_219065241.1 | ash family protein | - |
| QDX00_RS23565 (55106) | 55106..56137 | + | 1032 | WP_000907862.1 | plasmid replication initiator RepA | - |
| QDX00_RS23570 (57043) | 57043..57327 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
| QDX00_RS23575 (57327) | 57327..57602 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| QDX00_RS23580 (57708) | 57708..57911 | + | 204 | Protein_56 | hypothetical protein | - |
| QDX00_RS23585 (58413) | 58413..59936 | - | 1524 | Protein_57 | Tn3 family transposase | - |
| QDX00_RS23590 (59998) | 59998..60750 | + | 753 | WP_000602738.1 | IS6 family transposase | - |
| QDX00_RS23595 (60810) | 60810..61097 | - | 288 | Protein_59 | AAC(3) family N-acetyltransferase | - |
| QDX00_RS23600 (61172) | 61172..62197 | - | 1026 | WP_000742814.1 | aminoglycoside O-phosphotransferase APH(4)-Ia | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | aph(4)-Ia / aac(3)-IVa / blaTEM-52B / tet(A) / sul2 / aph(3'')-Ib / aph(6)-Id | - | 1..105315 | 105315 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|