Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023791..2024062 | Replicon | chromosome |
| Accession | NZ_CP122844 | ||
| Organism | Escherichia coli strain ETEC1722 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023921..2024024 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023791..2024062 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX00_RS09835 | 2020346..2021008 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QDX00_RS09840 | 2021032..2021688 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDX00_RS09845 | 2021790..2022020 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDX00_RS09850 | 2022159..2022533 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDX00_RS09855 | 2022537..2023409 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QDX00_RS09860 | 2023422..2023763 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2023791..2024062 | - | 272 | - | - | Antitoxin |
| - | 2023921..2024024 | + | 104 | - | - | Toxin |
| QDX00_RS09865 | 2024159..2024815 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| QDX00_RS09870 | 2024816..2025007 | - | 192 | WP_001338167.1 | YebW family protein | - |
| QDX00_RS09875 | 2025112..2025348 | - | 237 | WP_001338166.1 | YebV family protein | - |
| QDX00_RS09880 | 2025466..2026905 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278057 NZ_CP122844:2023921-2024024 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278057 NZ_CP122844:c2024062-2023791 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
