Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2144627..2144898 | Replicon | chromosome |
| Accession | NZ_CP122837 | ||
| Organism | Escherichia coli strain ETEC1729 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2144757..2144860 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2144627..2144898 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW97_RS10320 | 2141182..2141844 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW97_RS10325 | 2141868..2142524 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW97_RS10330 | 2142626..2142856 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW97_RS10335 | 2142995..2143369 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QDW97_RS10340 | 2143373..2144245 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QDW97_RS10345 | 2144258..2144599 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2144627..2144898 | - | 272 | - | - | Antitoxin |
| - | 2144757..2144860 | + | 104 | - | - | Toxin |
| QDW97_RS10350 | 2144995..2145651 | + | 657 | WP_282843756.1 | protein-serine/threonine phosphatase | - |
| QDW97_RS10355 | 2145652..2145843 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW97_RS10360 | 2145948..2146184 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW97_RS10365 | 2146302..2147741 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T278025 NZ_CP122837:2144757-2144860 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT278025 NZ_CP122837:c2144898-2144627 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
