Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2099526..2099797 | Replicon | chromosome |
| Accession | NZ_CP122832 | ||
| Organism | Escherichia coli strain ETEC1730 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2099656..2099759 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2099526..2099797 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY27_RS10260 | 2096082..2096744 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QDY27_RS10265 | 2096767..2097423 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDY27_RS10270 | 2097525..2097755 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDY27_RS10275 | 2097894..2098268 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDY27_RS10280 | 2098272..2099144 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QDY27_RS10285 | 2099157..2099498 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2099526..2099797 | - | 272 | - | - | Antitoxin |
| - | 2099656..2099759 | + | 104 | - | - | Toxin |
| QDY27_RS10290 | 2099894..2100550 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| QDY27_RS10295 | 2100551..2100742 | - | 192 | WP_001338167.1 | YebW family protein | - |
| QDY27_RS10300 | 2100847..2101083 | - | 237 | WP_001338166.1 | YebV family protein | - |
| QDY27_RS10305 | 2101201..2102640 | - | 1440 | WP_032187451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277998 NZ_CP122832:2099656-2099759 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277998 NZ_CP122832:c2099797-2099526 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
