Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2470594..2471120 | Replicon | chromosome |
| Accession | NZ_CP122816 | ||
| Organism | Escherichia coli strain ETEC1731 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QDY29_RS12190 | Protein ID | WP_000323025.1 |
| Coordinates | 2470833..2471120 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QDY29_RS12185 | Protein ID | WP_000534858.1 |
| Coordinates | 2470594..2470833 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY29_RS12145 (2465780) | 2465780..2466007 | + | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| QDY29_RS12150 (2465991) | 2465991..2466512 | + | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| QDY29_RS12155 (2466493) | 2466493..2467458 | + | 966 | WP_000054506.1 | hypothetical protein | - |
| QDY29_RS12160 (2467499) | 2467499..2467918 | + | 420 | WP_001151195.1 | DUF977 family protein | - |
| QDY29_RS12165 (2467973) | 2467973..2469022 | + | 1050 | Protein_2380 | IS1202-like element ISEsa1 family transposase | - |
| QDY29_RS12170 (2469143) | 2469143..2469292 | + | 150 | WP_180302674.1 | protein YdfW | - |
| QDY29_RS12175 (2469729) | 2469729..2470061 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| QDY29_RS12180 (2470264) | 2470264..2470569 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDY29_RS12185 (2470594) | 2470594..2470833 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QDY29_RS12190 (2470833) | 2470833..2471120 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QDY29_RS12195 (2471192) | 2471192..2471347 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDY29_RS12200 (2471564) | 2471564..2471815 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDY29_RS12205 (2471882) | 2471882..2472160 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDY29_RS12210 (2472162) | 2472162..2473211 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| QDY29_RS12215 (2473225) | 2473225..2473977 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDY29_RS12220 (2474255) | 2474255..2474344 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDY29_RS12225 (2474399) | 2474399..2474611 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDY29_RS12230 (2474912) | 2474912..2475127 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDY29_RS12235 (2475491) | 2475491..2475661 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| QDY29_RS12240 (2475881) | 2475881..2476096 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2461174..2509990 | 48816 | |
| - | inside | Prophage | - | - | 2461174..2520299 | 59125 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|