Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2016653..2016924 | Replicon | chromosome |
| Accession | NZ_CP122727 | ||
| Organism | Escherichia coli strain ETEC1746 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2016783..2016886 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2016653..2016924 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW99_RS09805 | 2013208..2013870 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW99_RS09810 | 2013894..2014550 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW99_RS09815 | 2014652..2014882 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW99_RS09820 | 2015021..2015395 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDW99_RS09825 | 2015399..2016271 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QDW99_RS09830 | 2016284..2016625 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2016653..2016924 | - | 272 | - | - | Antitoxin |
| - | 2016783..2016886 | + | 104 | - | - | Toxin |
| QDW99_RS09835 | 2017021..2017677 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| QDW99_RS09840 | 2017678..2017869 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW99_RS09845 | 2017974..2018210 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW99_RS09850 | 2018328..2019767 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277814 NZ_CP122727:2016783-2016886 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277814 NZ_CP122727:c2016924-2016653 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
