Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2908165..2908436 | Replicon | chromosome |
| Accession | NZ_CP122722 | ||
| Organism | Escherichia coli strain ETEC1747 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2908203..2908306 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2908165..2908436 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW91_RS14605 | 2905322..2906761 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QDW91_RS14610 | 2906879..2907115 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QDW91_RS14615 | 2907220..2907411 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QDW91_RS14620 | 2907412..2908068 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2908165..2908436 | + | 272 | - | - | Antitoxin |
| - | 2908203..2908306 | - | 104 | - | - | Toxin |
| QDW91_RS14625 | 2908464..2908805 | - | 342 | WP_000976492.1 | YebY family protein | - |
| QDW91_RS14630 | 2908818..2909690 | - | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| QDW91_RS14635 | 2909694..2910068 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QDW91_RS14640 | 2910207..2910437 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW91_RS14645 | 2910539..2911195 | + | 657 | WP_112016036.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW91_RS14650 | 2911219..2911881 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277792 NZ_CP122722:c2908306-2908203 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277792 NZ_CP122722:2908165-2908436 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
