Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2475726..2475997 | Replicon | chromosome |
| Accession | NC_017906 | ||
| Organism | Escherichia coli Xuzhou21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2475764..2475867 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2475726..2475997 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDCO157_RS12855 | 2472883..2474322 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CDCO157_RS12860 | 2474440..2474676 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CDCO157_RS12865 | 2474781..2474972 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CDCO157_RS12870 | 2474973..2475629 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2475726..2475997 | + | 272 | - | - | Antitoxin |
| - | 2475764..2475867 | - | 104 | - | - | Toxin |
| CDCO157_RS12880 | 2476025..2476366 | - | 342 | WP_000976483.1 | YebY family protein | - |
| CDCO157_RS12885 | 2476379..2477251 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| CDCO157_RS12890 | 2477255..2477629 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| CDCO157_RS12895 | 2477768..2477998 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CDCO157_RS12900 | 2478100..2478756 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| CDCO157_RS12905 | 2478780..2479442 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27779 NC_017906:c2475867-2475764 [Escherichia coli Xuzhou21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27779 NC_017906:2475726-2475997 [Escherichia coli Xuzhou21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
