Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2976951..2977222 | Replicon | chromosome |
| Accession | NZ_CP122712 | ||
| Organism | Escherichia coli strain ETEC1749 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2976989..2977092 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2976951..2977222 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX02_RS14975 | 2974108..2975547 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QDX02_RS14980 | 2975665..2975901 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QDX02_RS14985 | 2976006..2976197 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QDX02_RS14990 | 2976198..2976854 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2976951..2977222 | + | 272 | - | - | Antitoxin |
| - | 2976989..2977092 | - | 104 | - | - | Toxin |
| QDX02_RS14995 | 2977249..2977590 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QDX02_RS15000 | 2977603..2978475 | - | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| QDX02_RS15005 | 2978479..2978853 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| QDX02_RS15010 | 2978992..2979222 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDX02_RS15015 | 2979324..2979980 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDX02_RS15020 | 2980004..2980666 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2974102..3047433 | 73331 | |
| - | inside | Prophage | - | - | 2961113..3047433 | 86320 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277733 NZ_CP122712:c2977092-2976989 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277733 NZ_CP122712:2976951-2977222 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
