Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2165402..2165673 | Replicon | chromosome |
| Accession | NZ_CP122685 | ||
| Organism | Escherichia coli strain ETEC4067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2165532..2165635 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2165402..2165673 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX30_RS10525 | 2161957..2162619 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDX30_RS10530 | 2162643..2163299 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDX30_RS10535 | 2163401..2163631 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDX30_RS10540 | 2163770..2164144 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDX30_RS10545 | 2164148..2165020 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDX30_RS10550 | 2165033..2165374 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2165402..2165673 | - | 272 | - | - | Antitoxin |
| - | 2165532..2165635 | + | 104 | - | - | Toxin |
| QDX30_RS10555 | 2165770..2166426 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDX30_RS10560 | 2166427..2166618 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDX30_RS10565 | 2166723..2166959 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDX30_RS10570 | 2167077..2168516 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277697 NZ_CP122685:2165532-2165635 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277697 NZ_CP122685:c2165673-2165402 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
