Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2149082..2149353 | Replicon | chromosome |
| Accession | NZ_CP122681 | ||
| Organism | Escherichia coli strain ETEC4068 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2149212..2149315 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2149082..2149353 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW67_RS10400 | 2145637..2146299 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW67_RS10405 | 2146323..2146979 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW67_RS10410 | 2147081..2147311 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW67_RS10415 | 2147450..2147824 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDW67_RS10420 | 2147828..2148700 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDW67_RS10425 | 2148713..2149054 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2149082..2149353 | - | 272 | - | - | Antitoxin |
| - | 2149212..2149315 | + | 104 | - | - | Toxin |
| QDW67_RS10430 | 2149450..2150106 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDW67_RS10435 | 2150107..2150298 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW67_RS10440 | 2150403..2150639 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW67_RS10445 | 2150757..2152196 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2141772..2165193 | 23421 | |
| - | inside | Prophage | - | - | 2125299..2165193 | 39894 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277679 NZ_CP122681:2149212-2149315 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277679 NZ_CP122681:c2149353-2149082 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
