Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2196709..2196980 | Replicon | chromosome |
| Accession | NZ_CP122679 | ||
| Organism | Escherichia coli strain ETEC4069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2196839..2196942 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2196709..2196980 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW53_RS10735 | 2193264..2193926 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW53_RS10740 | 2193950..2194606 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW53_RS10745 | 2194708..2194938 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW53_RS10750 | 2195077..2195451 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDW53_RS10755 | 2195455..2196327 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDW53_RS10760 | 2196340..2196681 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2196709..2196980 | - | 272 | - | - | Antitoxin |
| - | 2196839..2196942 | + | 104 | - | - | Toxin |
| QDW53_RS10765 | 2197077..2197733 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDW53_RS10770 | 2197734..2197925 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW53_RS10775 | 2198030..2198266 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW53_RS10780 | 2198384..2199823 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2172926..2212820 | 39894 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277657 NZ_CP122679:2196839-2196942 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTTTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTTTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277657 NZ_CP122679:c2196980-2196709 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAAACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAAACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
