Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2169077..2169348 | Replicon | chromosome |
| Accession | NZ_CP122673 | ||
| Organism | Escherichia coli strain ETEC4071 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2169207..2169310 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2169077..2169348 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW56_RS10560 | 2165632..2166294 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW56_RS10565 | 2166318..2166974 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW56_RS10570 | 2167076..2167306 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW56_RS10575 | 2167445..2167819 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDW56_RS10580 | 2167823..2168695 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDW56_RS10585 | 2168708..2169049 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2169077..2169348 | - | 272 | - | - | Antitoxin |
| - | 2169207..2169310 | + | 104 | - | - | Toxin |
| QDW56_RS10590 | 2169445..2170101 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDW56_RS10595 | 2170102..2170293 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW56_RS10600 | 2170398..2170634 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW56_RS10605 | 2170752..2172191 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2161767..2185188 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277608 NZ_CP122673:2169207-2169310 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277608 NZ_CP122673:c2169348-2169077 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
