Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2553436..2553707 | Replicon | chromosome |
| Accession | NZ_CP122655 | ||
| Organism | Escherichia coli strain ETEC4074 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2553474..2553577 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2553436..2553707 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW60_RS12735 | 2550593..2552032 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QDW60_RS12740 | 2552150..2552386 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QDW60_RS12745 | 2552491..2552682 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QDW60_RS12750 | 2552683..2553339 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 2553436..2553707 | + | 272 | - | - | Antitoxin |
| - | 2553474..2553577 | - | 104 | - | - | Toxin |
| QDW60_RS12755 | 2553735..2554076 | - | 342 | WP_000976476.1 | YebY family protein | - |
| QDW60_RS12760 | 2554089..2554961 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QDW60_RS12765 | 2554965..2555339 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDW60_RS12770 | 2555478..2555708 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW60_RS12775 | 2555810..2556466 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW60_RS12780 | 2556490..2557152 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277559 NZ_CP122655:c2553577-2553474 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277559 NZ_CP122655:2553436-2553707 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
