Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsxAB/Xre(antitoxin) |
Location | 42760..43261 | Replicon | plasmid unnamed8 |
Accession | NZ_CP122642 | ||
Organism | Escherichia coli strain ETEC4085 |
Toxin (Protein)
Gene name | TsxA | Uniprot ID | Q9F571 |
Locus tag | QDW62_RS29670 | Protein ID | WP_000702246.1 |
Coordinates | 43001..43261 (-) | Length | 87 a.a. |
Antitoxin (Protein)
Gene name | TsxB | Uniprot ID | - |
Locus tag | QDW62_RS29665 | Protein ID | WP_001132407.1 |
Coordinates | 42760..43011 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QDW62_RS29625 (QDW62_29625) | 37955..38656 | + | 702 | WP_000280995.1 | StbB family protein | - |
QDW62_RS29630 (QDW62_29630) | 38703..39302 | + | 600 | WP_000091422.1 | hypothetical protein | - |
QDW62_RS29635 (QDW62_29635) | 39322..39648 | + | 327 | WP_000206697.1 | hypothetical protein | - |
QDW62_RS29640 (QDW62_29640) | 39779..40216 | - | 438 | WP_000466318.1 | type II toxin-antitoxin system HicB family antitoxin | - |
QDW62_RS29645 (QDW62_29645) | 40241..40423 | - | 183 | WP_000833470.1 | type II toxin-antitoxin system HicA family toxin | - |
QDW62_RS29650 (QDW62_29650) | 40720..41139 | + | 420 | WP_000068544.1 | hypothetical protein | - |
QDW62_RS29655 (QDW62_29655) | 41246..41512 | - | 267 | WP_000681608.1 | type II toxin-antitoxin system HicB family antitoxin | - |
QDW62_RS29660 (QDW62_29660) | 41932..42210 | - | 279 | WP_000545937.1 | hypothetical protein | - |
QDW62_RS29665 (QDW62_29665) | 42760..43011 | - | 252 | WP_001132407.1 | transcriptional regulator | Antitoxin |
QDW62_RS29670 (QDW62_29670) | 43001..43261 | - | 261 | WP_000702246.1 | hypothetical protein | Toxin |
QDW62_RS29675 (QDW62_29675) | 43312..43536 | - | 225 | WP_000814384.1 | hypothetical protein | - |
QDW62_RS29680 (QDW62_29680) | 43634..43843 | - | 210 | WP_000866037.1 | hypothetical protein | - |
QDW62_RS29685 (QDW62_29685) | 43885..44208 | - | 324 | WP_000427402.1 | hypothetical protein | - |
QDW62_RS29690 (QDW62_29690) | 44789..45118 | - | 330 | WP_000855118.1 | hypothetical protein | - |
QDW62_RS29695 (QDW62_29695) | 45716..46381 | + | 666 | WP_000532148.1 | division plane positioning ATPase MipZ | - |
QDW62_RS29700 (QDW62_29700) | 46460..46744 | + | 285 | WP_282840423.1 | CopG family transcriptional regulator | - |
QDW62_RS29705 (QDW62_29705) | 46815..47072 | - | 258 | Protein_55 | transposase zinc-binding domain-containing protein | - |
QDW62_RS29710 (QDW62_29710) | 47347..47688 | - | 342 | WP_023909256.1 | chaperonin | - |
QDW62_RS29715 (QDW62_29715) | 47649..48098 | - | 450 | WP_013362817.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Mobilizable plasmid | erm(B) | - | 1..66179 | 66179 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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