Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109872..2110143 | Replicon | chromosome |
| Accession | NZ_CP122629 | ||
| Organism | Escherichia coli strain ETEC4088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2110002..2110105 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109872..2110143 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW58_RS10155 | 2106427..2107089 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW58_RS10160 | 2107113..2107769 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW58_RS10165 | 2107871..2108101 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW58_RS10170 | 2108240..2108614 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QDW58_RS10175 | 2108618..2109490 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| QDW58_RS10180 | 2109503..2109844 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2109872..2110143 | - | 272 | - | - | Antitoxin |
| - | 2110002..2110105 | + | 104 | - | - | Toxin |
| QDW58_RS10185 | 2110240..2110896 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| QDW58_RS10190 | 2110897..2111088 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW58_RS10195 | 2111193..2111429 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW58_RS10200 | 2111547..2112986 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277413 NZ_CP122629:2110002-2110105 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277413 NZ_CP122629:c2110143-2109872 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
