Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YoeB-YefM |
| Location | 2078281..2078783 | Replicon | chromosome |
| Accession | NC_017846 | ||
| Organism | Aggregatibacter actinomycetemcomitans D7S-1 | ||
Toxin (Protein)
| Gene name | relB | Uniprot ID | A0A5D0ELP0 |
| Locus tag | D7S_RS10315 | Protein ID | WP_005549367.1 |
| Coordinates | 2078281..2078535 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | relE | Uniprot ID | A0A5D0ELA5 |
| Locus tag | D7S_RS10320 | Protein ID | WP_005552753.1 |
| Coordinates | 2078532..2078783 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | lsgD / lsgE / lsgF / kdsA | 1948724..2130999 | 182275 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10203.68 Da Isoelectric Point: 8.8844
>T27738 WP_005549367.1 NC_017846:c2078535-2078281 [Aggregatibacter actinomycetemcomitans D7S-1]
MILAWTETAWEDYLYWQQVDKKTLVRINKLIQNITRSPFEGLGNPEPLKHQLSGFWSRRIDKEHRLVYQVSDSHLTIIQC
RYHY
MILAWTETAWEDYLYWQQVDKKTLVRINKLIQNITRSPFEGLGNPEPLKHQLSGFWSRRIDKEHRLVYQVSDSHLTIIQC
RYHY
Download Length: 255 bp
>T27738 NC_017846:c2078535-2078281 [Aggregatibacter actinomycetemcomitans D7S-1]
ATGATTTTAGCTTGGACAGAAACCGCCTGGGAAGATTATCTTTATTGGCAGCAAGTTGATAAAAAGACGTTGGTGCGCAT
TAATAAACTTATCCAAAATATTACCAGATCACCTTTCGAAGGCTTAGGCAATCCTGAACCTTTAAAACATCAGTTATCCG
GGTTTTGGTCTAGAAGAATAGATAAAGAGCATCGTCTTGTATACCAAGTATCGGATAGCCATTTAACGATTATTCAATGC
CGCTATCACTACTAA
ATGATTTTAGCTTGGACAGAAACCGCCTGGGAAGATTATCTTTATTGGCAGCAAGTTGATAAAAAGACGTTGGTGCGCAT
TAATAAACTTATCCAAAATATTACCAGATCACCTTTCGAAGGCTTAGGCAATCCTGAACCTTTAAAACATCAGTTATCCG
GGTTTTGGTCTAGAAGAATAGATAAAGAGCATCGTCTTGTATACCAAGTATCGGATAGCCATTTAACGATTATTCAATGC
CGCTATCACTACTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9414.65 Da Isoelectric Point: 5.0637
>AT27738 WP_005552753.1 NC_017846:c2078783-2078532 [Aggregatibacter actinomycetemcomitans D7S-1]
MNVISYSAFRAELATTLDQVVADHSPVMITRQNGKHAVVMSLEDFAAYEETAYLLRSPKNRERLLASIDQFNSGKIVERE
LQE
MNVISYSAFRAELATTLDQVVADHSPVMITRQNGKHAVVMSLEDFAAYEETAYLLRSPKNRERLLASIDQFNSGKIVERE
LQE
Download Length: 252 bp
>AT27738 NC_017846:c2078783-2078532 [Aggregatibacter actinomycetemcomitans D7S-1]
ATGAATGTAATAAGTTATTCTGCGTTCCGTGCAGAATTAGCAACAACACTTGATCAGGTGGTTGCAGATCATAGTCCAGT
CATGATTACCAGACAAAATGGCAAACACGCTGTTGTAATGAGTTTAGAAGATTTCGCAGCTTACGAAGAAACGGCTTATT
TATTACGTAGTCCAAAAAATAGAGAGCGTTTGTTAGCCTCTATTGACCAGTTCAATTCAGGTAAAATCGTCGAACGGGAA
CTCCAGGAATGA
ATGAATGTAATAAGTTATTCTGCGTTCCGTGCAGAATTAGCAACAACACTTGATCAGGTGGTTGCAGATCATAGTCCAGT
CATGATTACCAGACAAAATGGCAAACACGCTGTTGTAATGAGTTTAGAAGATTTCGCAGCTTACGAAGAAACGGCTTATT
TATTACGTAGTCCAAAAAATAGAGAGCGTTTGTTAGCCTCTATTGACCAGTTCAATTCAGGTAAAATCGTCGAACGGGAA
CTCCAGGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A5D0ELP0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A5D0ELA5 |