Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2073660..2073894 | Replicon | chromosome |
| Accession | NZ_CP122620 | ||
| Organism | Escherichia coli strain ETEC4090 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2073790..2073893 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2073660..2073894 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW69_RS10225 | 2070215..2070877 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW69_RS10230 | 2070901..2071557 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW69_RS10235 | 2071659..2071889 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW69_RS10240 | 2072028..2072402 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDW69_RS10245 | 2072406..2073278 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QDW69_RS10250 | 2073291..2073632 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2073660..2073894 | - | 235 | - | - | Antitoxin |
| - | 2073790..2073893 | + | 104 | - | - | Toxin |
| QDW69_RS10255 | 2074025..2075101 | - | 1077 | WP_053508942.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| QDW69_RS10260 | 2075067..2075348 | - | 282 | WP_077248935.1 | excisionase | - |
| QDW69_RS10265 | 2075455..2075643 | - | 189 | WP_021529595.1 | DUF1187 family protein | - |
| - | 2075459..2075637 | + | 179 | NuclAT_5 | - | - |
| - | 2075459..2075637 | + | 179 | NuclAT_5 | - | - |
| - | 2075459..2075637 | + | 179 | NuclAT_5 | - | - |
| - | 2075459..2075637 | + | 179 | NuclAT_5 | - | - |
| QDW69_RS10270 | 2075636..2075830 | - | 195 | WP_187182214.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QDW69_RS10275 | 2075894..2076982 | - | 1089 | WP_230905604.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1997902..2126330 | 128428 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277353 NZ_CP122620:2073790-2073893 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT277353 NZ_CP122620:c2073894-2073660 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
