Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3531996..3532614 Replicon chromosome
Accession NZ_CP122617
Organism Escherichia coli strain ETEC4091

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag QDW52_RS17310 Protein ID WP_001291435.1
Coordinates 3532396..3532614 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag QDW52_RS17305 Protein ID WP_000344800.1
Coordinates 3531996..3532370 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QDW52_RS17295 (3527085) 3527085..3528278 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
QDW52_RS17300 (3528301) 3528301..3531450 + 3150 WP_001132469.1 efflux RND transporter permease AcrB -
QDW52_RS17305 (3531996) 3531996..3532370 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
QDW52_RS17310 (3532396) 3532396..3532614 + 219 WP_001291435.1 HHA domain-containing protein Toxin
QDW52_RS17315 (3532786) 3532786..3533337 + 552 WP_000102568.1 maltose O-acetyltransferase -
QDW52_RS17320 (3533453) 3533453..3533923 + 471 WP_000136192.1 YlaC family protein -
QDW52_RS17325 (3534087) 3534087..3535637 + 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
QDW52_RS17330 (3535679) 3535679..3536032 - 354 WP_000878140.1 DUF1428 domain-containing protein -
QDW52_RS17340 (3536411) 3536411..3536722 + 312 WP_000409911.1 MGMT family protein -
QDW52_RS17345 (3536753) 3536753..3537325 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T277337 WP_001291435.1 NZ_CP122617:3532396-3532614 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT277337 WP_000344800.1 NZ_CP122617:3531996-3532370 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References